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Master MSR Assignments (2014-2015)

1. Sing GC, Joiner WM, Nanayakkara T, Brayanov JB, Smith MA (2009) Primitives for motor adaptation reflect correlated neural tuning to position and velocity. Neuron 64(4):575-589. Supplementary
2. Izawa J, Shadmehr R (2011) Learning from sensory and reward prediction errors during motor adaptation. PLoS Comput Biol 7(3):e1002012.
3. Geijtenbeek T, van de Panne M, van der Stappen AF (2013) Flexible muscle-based locomotion for bipedal creatures. ACM Trans Graph 32(6):206.
4. Saeb S, Weber C, Triesch J (2011) Learning the optimal control of coordinated eye and head movements. PLoS Comput Biol 7(11):e1002253.
5. Verstynen T, Sabes PN (2011) How each movement changes the next: An experimental and theoretical study of fast adaptive priors in reaching. J Neurosci 31(27):10050-10059.
6. Nagengast AJ, Braun DA, Wolpert DM (2010) Risk-sensitive optimal feedback control accounts for sensorimotor behavior under uncertainty. PLoS Comput Biol 6(7):e1000857.
7. Braun DA, Aertsen A, Wolpert DM, Mehring C (2009) Learning optimal adaptation strategies in unpredictable motor tasks. J Neurosci 29(20):6472-6478.
8. Nagengast AJ, Braun DA, Wolpert DM (2009) Optimal control predicts human performance on objects with internal degrees of freedom. PLoS Comput Biol 5(6):e1000419.
9. Flanagan JR, Vetter P, Johansson RS, Wolpert DM (2003) Prediction precedes control in motor learning. Curr Biol 13(2):146-150.
10. Smith MA, Ghazizadeh A, Shadmehr R (2006) Interacting adaptive processes with different timescales underlie short-term motor learning. PLoS Biol 4(6):e179.
11. Hwang EJ, Donchin O, Smith MA, Shadmehr R (2003) A gain-field encoding of limb position and velocity in the internal model of arm dynamics. PLoS Biol 1(2):209-220.
12. Srinivasan M, Ruina A (2006) Computer optimization of a minimal biped model discovers walking and running. Nature 439:72-75.
13. Kluzik J, Diedrichsen J, Shadmehr R, Bastian AJ (2008) Reach adaptation: What determines whether we learn an internal model of the tool or adapt the model of our arm? J Neurophysiol 100(3):1455-1464.
14. Selen LP, Franklin DW, Wolpert DM (2009) Impedance control reduces instability that arises from motor noise. J Neurosci 29(40):12606-12616.
15. Velliste M, Perel S, Spalding MC, Whitford AS, Schwartz AB (2008) Cortical control of a prosthetic arm for self-feeding. Nature 453(7198):1098-1101.
16. Diedrichsen J, White O, Newman D, Lally N (2010) Use-dependent and error-based learning of motor behaviors. J Neurosci 30(15):5159-5166.
17. Tamosiunaite M, Asfour T, Worgotter F (2009) Learning to reach by reinforcement learning using a receptive field based function approximation approach with continuous actions. Biol Cybern 100(3):249-260.
18. Manoonpong P, Geng T, Kulvicius T, Porr B, Worgotter F (2007) Adaptive, fast walking in a biped robot under neuronal control and learning. PLoS Comput Biol 3(7):e134.
19. Groh JM (2001) Converting neural signals from place codes to rate codes. Biol Cybern 85(3):159-165.
20. Shadmehr R, Orban de Xivry JJ, Xu-Wilson M, Shih TY (2010) Temporal discounting of reward and the cost of time in motor control. J Neurosci 30(31):10507-10516.
21. Resulaj A, Kiani R, Wolpert DM, Shadlen MN (2009) Changes of mind in decision-making. Nature 461(7261):263-266.
22. Charlesworth JD, Warren TL, Brainard MS (2012) Covert skill learning in a cortical-basal ganglia circuit. Nature 486(7402):251-255. Supplementary

Supplementary material for Velliste et al. (2008)



Master MSR Assignments (2013-2014)

1. Braun DA, Aertsen A, Wolpert DM, Mehring C (2009) Learning optimal adaptation strategies in unpredictable motor tasks. J Neurosci 29(20):6472-6478.
2. Nagengast AJ, Braun DA, Wolpert DM (2009) Optimal control predicts human performance on objects with internal degrees of freedom. PLoS Comput Biol 5(6):e1000419.
3. Flanagan JR, Vetter P, Johansson RS, Wolpert DM (2003) Prediction precedes control in motor learning. Curr Biol 13(2):146-150.
4. Smith MA, Ghazizadeh A, Shadmehr R (2006) Interacting adaptive processes with different timescales underlie short-term motor learning. PLoS Biol 4(6):e179.
5. Hwang EJ, Donchin O, Smith MA, Shadmehr R (2003) A gain-field encoding of limb position and velocity in the internal model of arm dynamics. PLoS Biol 1(2):209-220.
6. Srinivasan M, Ruina A (2006) Computer optimization of a minimal biped model discovers walking and running. Nature 439:72-75.
7. Kluzik J, Diedrichsen J, Shadmehr R, Bastian AJ (2008) Reach adaptation: What determines whether we learn an internal model of the tool or adapt the model of our arm? J Neurophysiol 100(3):1455-1464.
8. Selen LP, Franklin DW, Wolpert DM (2009) Impedance control reduces instability that arises from motor noise. J Neurosci 29(40):12606-12616.
9. Velliste M, Perel S, Spalding MC, Whitford AS, Schwartz AB (2008) Cortical control of a prosthetic arm for self-feeding. Nature 453(7198):1098-1101.
10. Diedrichsen J, White O, Newman D, Lally N (2010) Use-dependent and error-based learning of motor behaviors. J Neurosci 30(15):5159-5166.
11. Tamosiunaite M, Asfour T, Worgotter F (2009) Learning to reach by reinforcement learning using a receptive field based function approximation approach with continuous actions. Biol Cybern 100(3):249-260.
12. Manoonpong P, Geng T, Kulvicius T, Porr B, Worgotter F (2007) Adaptive, fast walking in a biped robot under neuronal control and learning. PLoS Comput Biol 3(7):e134.
13. Groh JM (2001) Converting neural signals from place codes to rate codes. Biol Cybern 85(3):159-165.
14. Shadmehr R, Orban de Xivry JJ, Xu-Wilson M, Shih TY (2010) Temporal discounting of reward and the cost of time in motor control. J Neurosci 30(31):10507-10516.
15. Resulaj A, Kiani R, Wolpert DM, Shadlen MN (2009) Changes of mind in decision-making. Nature 461(7261):263-266.
16. Charlesworth JD, Warren TL, Brainard MS (2012) Covert skill learning in a cortical-basal ganglia circuit. Nature 486(7402):251-255. Supplementary

Supplementary material for Velliste et al. (2008)



Master MSR Assignments (2012-2013)

1. Braun DA, Aertsen A, Wolpert DM, Mehring C (2009) Learning optimal adaptation strategies in unpredictable motor tasks. J Neurosci 29(20):6472-6478.
2. Nagengast AJ, Braun DA, Wolpert DM (2009) Optimal control predicts human performance on objects with internal degrees of freedom. PLoS Comput Biol 5(6):e1000419.
3. Flanagan JR, Vetter P, Johansson RS, Wolpert DM (2003) Prediction precedes control in motor learning. Curr Biol 13(2):146-150.
4. Smith MA, Ghazizadeh A, Shadmehr R (2006) Interacting adaptive processes with different timescales underlie short-term motor learning. PLoS Biol 4(6):e179.
5. Hwang EJ, Donchin O, Smith MA, Shadmehr R (2003) A gain-field encoding of limb position and velocity in the internal model of arm dynamics. PLoS Biol 1(2):209-220.
6. Srinivasan M, Ruina A (2006) Computer optimization of a minimal biped model discovers walking and running. Nature 439:72-75.
7. Kluzik J, Diedrichsen J, Shadmehr R, Bastian AJ (2008) Reach adaptation: What determines whether we learn an internal model of the tool or adapt the model of our arm? J Neurophysiol 100(3):1455-1464.
8. Selen LP, Franklin DW, Wolpert DM (2009) Impedance control reduces instability that arises from motor noise. J Neurosci 29(40):12606-12616.
9. Velliste M, Perel S, Spalding MC, Whitford AS, Schwartz AB (2008) Cortical control of a prosthetic arm for self-feeding. Nature 453(7198):1098-1101.
10. Diedrichsen J, White O, Newman D, Lally N (2010) Use-dependent and error-based learning of motor behaviors. J Neurosci 30(15):5159-5166.
11. Tamosiunaite M, Asfour T, Worgotter F (2009) Learning to reach by reinforcement learning using a receptive field based function approximation approach with continuous actions. Biol Cybern 100(3):249-260.
12. Manoonpong P, Geng T, Kulvicius T, Porr B, Worgotter F (2007) Adaptive, fast walking in a biped robot under neuronal control and learning. PLoS Comput Biol 3(7):e134.
13. Goossens HH, van Opstal AJ (2006) Dynamic ensemble coding of saccades in the monkey superior colliculus. J Neurophysiol 95(4):2326-2341.
14. Shadmehr R, Orban de Xivry JJ, Xu-Wilson M, Shih TY (2010) Temporal discounting of reward and the cost of time in motor control. J Neurosci 30(31):10507-10516.
15. Resulaj A, Kiani R, Wolpert DM, Shadlen MN (2009) Changes of mind in decision-making. Nature 461(7261):263-266.



Master MSR Assignments (2011-2012)

1. Braun DA, Aertsen A, Wolpert DM, Mehring C (2009) Learning optimal adaptation strategies in unpredictable motor tasks. J Neurosci 29(20):6472-6478.
2. Nagengast AJ, Braun DA, Wolpert DM (2009) Optimal control predicts human performance on objects with internal degrees of freedom. PLoS Comput Biol 5(6):e1000419.
3. Flanagan JR, Vetter P, Johansson RS, Wolpert DM (2003) Prediction precedes control in motor learning. Curr Biol 13(2):146-150.
4. Smith MA, Ghazizadeh A, Shadmehr R (2006) Interacting adaptive processes with different timescales underlie short-term motor learning. PLoS Biol 4(6):e179.
5. Hwang EJ, Donchin O, Smith MA, Shadmehr R (2003) A gain-field encoding of limb position and velocity in the internal model of arm dynamics. PLoS Biol 1(2):209-220.
6. Srinivasan M, Ruina A (2006) Computer optimization of a minimal biped model discovers walking and running. Nature 439:72-75.
7. Kluzik J, Diedrichsen J, Shadmehr R, Bastian AJ (2008) Reach adaptation: What determines whether we learn an internal model of the tool or adapt the model of our arm? J Neurophysiol 100(3):1455-1464.
8. Selen LP, Franklin DW, Wolpert DM (2009) Impedance control reduces instability that arises from motor noise. J Neurosci 29(40):12606-12616.
9. Velliste M, Perel S, Spalding MC, Whitford AS, Schwartz AB (2008) Cortical control of a prosthetic arm for self-feeding. Nature 453(7198):1098-1101.
10. Diedrichsen J, White O, Newman D, Lally N (2010) Use-dependent and error-based learning of motor behaviors. J Neurosci 30(15):5159-5166.
11. Tamosiunaite M, Asfour T, Worgotter F (2009) Learning to reach by reinforcement learning using a receptive field based function approximation approach with continuous actions. Biol Cybern 100(3):249-260.
12. Manoonpong P, Geng T, Kulvicius T, Porr B, Worgotter F (2007) Adaptive, fast walking in a biped robot under neuronal control and learning. PLoS Comput Biol 3(7):e134.

Supplementary material for Velliste et al. (2008)



Master MSR Assignments (2009-2010)

1. Diedrichsen J, Verstynen T, Hon A, Lehman SL, Ivry RB (2003) Anticipatory adjustments in the unloading task: Is an efference copy necessary for learning? Exp Brain Res 148(2):272-276.
2. Musallam S, Corneil BD, Greger B, Scherberger H, Andersen RA (2004) Cognitive control signals for neural prosthetics. Science 305(5681):258-262.
3. Diedrichsen J (2007) Optimal task-dependent changes of bimanual feedback control and adaptation. Curr Biol 17(19):1675-1679.
4. Ijspeert AJ, Crespi A, Ryczko D, Cabelguen JM (2007) From swimming to walking with a salamander robot driven by a spinal cord model. Science 315(5817):1416-1420.
5. Chhabra M, Jacobs RA (2008) Learning to combine motor primitives via greedy additive regression. J Mach Learn Res 9:1535-1558.
6. Han CE, Arbib MA, Schweighofer N (2008) Stroke rehabiilitation reaches a threshold. PLoS Comput Biol 4(8):1-13.
7. Huys R, Studenka BE, Rheaume NL, Zelaznik HN, Jirsa VK (2008) Distinct timing mechanisms produce discrete and continuous movements. PLoS Comput Biol 4(4):e1000061.
8. Kurtzer IL, Pruszynski JA, Scott SH (2008) Long-latency reflexes of the human arm reflect an internal model of limb dynamics. Curr Biol 18(6):449-453.
9. Tremblay S, Houle G, Ostry DJ (2008) Specificity of speech motor learning. J Neurosci 28(10):2426-2434.
10. van Beers RJ (2008) Saccadic eye movements minimize the consequences of motor noise. PLoS ONE 3(4):e2070.